Function reference • naoutils

Import qPCR results

read_qpcr_amplification_csv(): Read qPCR 'Amplification Data' table from a CSV file

read_qpcr_results_csv(): Read qPCR 'Results' or 'Standard Curve Result' table from a CSV file

clean_common(): Cleaning operation applied to results and amplification csv files

Import Kraken results

kraken_add_taxonomy(): Add full taxonomy path to a Kraken report data frame

kraken_complete(): Complete a set of Kraken reports by filling in zero counts (Not tested!)

kraken_remove_nonstandard_ranks(): Remove nonstandard ranks from Kraken reports

read_kraken_reports(): Read one or more Kraken2 sample reports